I had this question from Colin Hammond, posted it here in case others are suffering from it:
“Hi please could you offer any advice on soil treatment after removing a crop of onions that have basal rot. All the info I have read suggest to leave the bed onion free for at least 4 years is there any way of shortening this time and how did the basal rot fungus get into the soil ?
I have been rotating my crops around 3 beds.”
This rotting from soil upwards is becoming more common and I think that infected sets are to blame. Colin did not say if he grew from sets or seed. I have noticed it occasionally on set-grown onions and its a good idea not to plant any sets showing signs of mould or rotting, they should be bright and firm.
Once in the soil, I have not found it spreads wildly and have not re-suffered it after a 3 year gap, but I only had a small amount of onions infected.